Oct 13 – 15, 2025
Hotel Berlin, Berlin
Europe/Berlin timezone
All review results have been sent out on August 20th + September 2nd.

From Field to Genome: Genomic characterization of pneumococcal strains circulating at the human-wildlife interface in Sub-Saharan Africa

Oct 15, 2025, 9:30 AM
15m
Hall "Berlin"

Hall "Berlin"

Oral presentation One Health in Public Health Session 9: One Health in Public Health II

Speaker

Moritz J.S. Jochum (Helmholtz Institute for One Health)

Description

Lower respiratory tract infections are among the leading causes of death for children under five in Sub-Saharan Africa, with Streptococcus pneumoniae being the most common causative agent. Beyond its public health impact, S. pneumoniae has been shown to have implications for the conservation of endangered species, as humans have inadvertently transmitted the bacteria to wild great apes resulting in lethal outbreaks. Understanding serotype diversity and antimicrobial resistances at a local scale can guide tailored public health interventions, such as the selection of appropriate vaccines and antibiotic treatment, which can reduce disease burden and the risk of transmission to wildlife.

We conducted genomic characterization of pneumococcal strains carried asymptomatically by humans living and working in proximity to great apes in Taï National Park, Côte d’Ivoire, and Dzanga-Sangha Protected Areas, Central African Republic. A total of 473 nasopharyngeal swabs were collected; from these, 43 S. pneumoniae strains were isolated directly in the field using a solar-powered incubator. Molecular and genomic analyses were performed at the Institut Pasteur de Bangui, Centre Hospitalier Universitaire de Bouaké and the Helmholtz Institute for One Health in Greifswald. We revealed the circulation of multiple serotypes, including both vaccine-covered and non-covered types, and the presence of distinct antimicrobial resistance patterns. This study highlights how genomic surveillance can provide relevant data to inform prevention and treatment policies within a One Health framework.

Keywords

Whole Genome Sequencing, human-wildlife interface, genomic surveillance, conservation, public health

Registration ID 158
Professional Status of the Speaker PhD Student
Junior Scientist Status Yes, I am a Junior Scientist.

Author

Moritz J.S. Jochum (Helmholtz Institute for One Health)

Co-authors

Fréderic Singa Niatou (World Wide Fund for Nature (WWF) Central African Republic) Jephté Kaleb Kandou (World Wide Fund for Nature (WWF) Central African Republic) Christian N. Malaka (Institut Pasteur de Bangui) Ibrahim Bahsoun (Institut Pasteur de Bangui) Oby Wayoro (Centre Hospitalier Universitaire de Bouaké) Etilé Augustin Anoh (Centre Hospitalier Universitaire de Bouaké) Yanthe Nobel (Helmholtz Institute for One Health) Michael Schwabe (Helmholtz Institute for One Health) Stefan Heiden (Helmholtz Institute for One Health) Elias Eger (Helmholtz Institute for One Health) Antina Lübke-Becker (Freie Universität Berlin) Mathieu Cantat (CNRS (Centre national de la recherche) Lyon) Roman Wittig (CNRS (Centre national de la recherche) Lyon) Sven Hammerschmidt (Universität Greifswald) Marcus Fulde (Freie Universität Berlin) Fabian H. Leendertz (Helmholtz Institute for One Health) Livia V. Patrono (Helmholtz Institute for One Health)

Presentation materials

There are no materials yet.

Peer reviewing

Paper